View source for Neuron simulation environment

== References ==

* Carnevale, N.T. and Hines, M.L. ''The NEURON Book''. Cambridge, UK: Cambridge University Press, 2006.
* Destexhe, A. and Sejnowski, T.J. ''Thalamocortical Assemblies''. New York: Oxford University Press, 2001.
* Hindmarsh, A.C. and Serban, R. User documentation for CVODES, an ODE solver with sensitivity analysis capabilities. Lawrence Livermore National Laboratory, 2002.
* Hindmarsh, A.C. and Taylor, A.G. User documentation for IDA, a differential-algebraic solver for sequential and parallel computers. Lawrence Livermore National Laboratory, 1999.
* Hines, M. Efficient computation of branched nerve equations. ''International Journal of Bio-Medical Computing'' 15:69-76, 1984.
* Hines, M.L. and Carnevale, N.T. NEURON: a tool for neuroscientists. ''The Neuroscientist'' 7:123-135, 2001.
* Hines, M.L., Davison, A.P. and Muller, E. NEURON and Python. ''Frontiers in Neuroinformatics'' 3:1. doi:10.3389/neuro.11.001.2009. http://frontiersin.org/neuroinformatics/paper/10.3389/neuro.11/001.2009/
* Johnston, D. and Wu, S.M.-S. ''Foundations of Cellular Neurophysiology''. Cambridge,MA: MIT Press, 1995.
* Kernighan, B.W. and Pike, R. Appendix 2: Hoc manual. In: ''The Unix Programming Environment''. Englewood Cliffs, NJ: Prentice-Hall, 1984.
* Lytton, W.W. ''From Computer to Brain''. New York: Springer-Verlag, 2002.
* Migliore, M., Cannia, C., Lytton, W.W., Markram, H. and Hines, M.L. Parallel network simulations with NEURON. ''Journal of Computational Neuroscience'' 21:110-119, 2006.
* Moore, J.W. and Stuart, A.E. ''Neurons in Action Version 2: Tutorials and Simulations Using NEURON''. Sunderland, MA: Sinauer Associates, 2007. http://neuronsinaction.com/

IDA and CVODES are part of [[SUNDIALS Equation Solvers|SUNDIALS]], which is available from [http://www.llnl.gov/CASC/sundials/ http://www.llnl.gov/CASC/sundials]

NEURON source code, installers, documentation, bibliography, course announcements, and The NEURON Forum are available via links at [http://www.neuron.yale.edu/ http://www.neuron.yale.edu/]

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<b>Internal references</b>

* Olaf Sporns (2007) [[Complexity]]. Scholarpedia, 2(10):1623.
* James Meiss (2007) [[Dynamical systems]]. Scholarpedia, 2(2):1629.
* James M. Bower and David Beeman (2007) [[GENESIS]]. Scholarpedia, 2(3):1383.
* Mark Aronoff (2007) [[Language]]. Scholarpedia, 2(5):3175.
* Marc-Oliver Gewaltig and Markus Diesmann (2007) [[NEST (NEural Simulation Tool)]]. Scholarpedia, 2(4):1430.
* Jeff Moehlis, Kresimir Josic, Eric T. Shea-Brown (2006) [[Periodic orbit]]. Scholarpedia, 1(7):1358.
* Philip Holmes and Eric T. Shea-Brown (2006) [[Stability]]. Scholarpedia, 1(10):1838.
* Alan C. Hindmarsh and Radu Serban (2007) [[Sundials equation solvers]]. Scholarpedia, 2(3):2860.
* John W. Moore (2007) [[Voltage clamp]]. Scholarpedia, 2(9):3060.
* Bard Ermentrout (2007) [[XPPAUT]]. Scholarpedia, 2(1):1399.