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Eugene M. Izhikevich (2006), Scholarpedia, 1(2):1. doi:10.4249/scholarpedia.1 revision #1302 [link to/cite this article]
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The period February 4, 2006 to August 1, 2006 is invitation-only. That is, only curators of Scholarpedia, 
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Official opening of Encyclopedia of computational neuroscience: October 1, 2006



Neuroscience

  • History of neuroscience

Neuronal excitability

  • Electrophysiology
    • Nernst potential
    • Equivalent circuit
    • Current-voltage relationship
    • Goldman-Hodgkin-Katz equation
    • Voltage-gated currents
    • Rheobase
  • Excitability
    • Action potential
    • Classification of excitability
    • Frequency-current relationship
    • Excitation block
    • Threshold
    • Rebound response
  • Firing patterns
    • Spike latency
    • Spike time variability
  • Gain modulation
  • Neuronal bistability
    • Up and down states
    • Plateau potential
  • Bursting
  • Calcium dynamics
  • Dynamic clamp
    • Current clamp
    • Voltage clamp
    • Conductance clamp
  • Hodgkin-Frankenhaeuser layer
  • Intrinsic plasticity
  • Neuromodulation
  • Neural oscillator
    • Pacemaker
  • Subthreshold oscillation
  • Stochastic channel model

Models of neurons

  • Compartmental models
    • Cable equation
    • Equivalent cylinder
  • Conductance-based models
  • Dendritic processing
    • Dendritic excitability
    • Back-propagating spikes
  • Firing rate model
  • FitzHugh-Nagumo model
  • GENESIS
  • Hodgkin-Huxley model
  • Integrate-and-fire neuron
  • Large-scale brain models
  • Morris-Lecar model
  • Neural simulation language
  • Noble model
  • NEURON
  • Resonate-and-fire neuron
    • Young model
  • Spike-response model

Network dynamics

  • Binding
  • Brain rhythms
  • Calcium wave
  • Cell assemblies
  • Central pattern generation
    • Half-center oscillator
  • Epilepsy
  • Memory replay
  • Network bistability
  • Neuronal avalanche
  • Neuronal code
    • Interval code
    • Population code
    • Rate code
    • Temporal code
  • Persistent activity
  • Polychrony
  • Respiration
  • Simulated in vivo condition
  • Synchrony
  • Synfire chain
  • Thalamocortical oscillations
    • Sleep oscillations

Circuits

  • Cultured network
  • Reward circuit
  • Stomatogastric system
  • Thalamocortical microcircuit

Synapse

  • Homeostatic plasticity
  • Synaptic plasticity
    • Hebbian plasticity
    • LTP
    • LTD
    • Sliding threshold rule
    • Short-term plasticity
  • Neuromodulation
  • Spike-timing dependent plasticity
  • Structural plasticity
  • Spines
  • Synapse
    • Neurotransmitters
    • Receptors
    • Alpha function
    • Quantal synaptic transmission
    • Dendro-dendritic synapse
    • Gap junction
    • Synaptic integration
    • Transmission failure
    • Silent synapse
  • Synaptic turnover

Cognition and behavior

  • Associative memory
  • Attention
  • Behaviorism
  • Brain-mind problem
  • Categorization
  • Cognitive map
  • Conditioning
  • Connectionism
  • Emotion
  • Gestalt
  • Habituation
  • Hemispheric specialization
  • Imitation
  • Language
  • Learning
  • Memory
  • Metaphor
  • Motivation
  • Music
  • Reward
  • Short-term memory
  • Working memory

Consciousness

  • Anesthesia
  • Animal consciousness
  • Binding problem
  • Conscious artifact
  • Dynamic core
  • Global workspace
  • Philosophy of consciousness
  • Intentionality
  • Mind-body problem
  • Neural correlates of consciousness
  • Neural Darwinism
  • Qualia
  • Self models
  • Sleep and dreaming
  • Zombie

Sensory-motor system

  • Action sequence learning
  • Brain-machine interface
  • Cerebellar control
  • Insect flight control
  • Motoneurons
  • Motor control
    • Equilibrium point hypothesis
    • Locomotion
    • Motor learning
    • Motor primitive
  • Reflex

Sensory system

  • Auditory system
  • Barrel cortex
  • Echolocation
  • Electrolocation
  • Olfaction
  • Somatosensory system
  • Somatotopy
  • Taste

Vision

  • Binocular vision
    • Binocular rivalry
    • Ocular dominance
  • Color perception
  • Contour perception
  • Directional selectivity
  • Masking
  • Ocular-motor coordination
  • Orientation columns
  • Retina
  • Receptive field
  • Saccade
  • Visual attention
  • Visual cognition
  • Visual illusion
  • Visual motion
  • Visual perception
  • Visual plasticity
  • Visual processing
  • Visual pursuit

Anatomy and physiology

  • Brain atlas
  • Computational neuroanatomy
  • Neocortex
  • Cortical cell types
  • Thalamus
  • Hippocampus
  • Cerebellum
  • Basal Ganglia
  • Midbrain
  • Limbic system
  • Olfactory Bulb
  • Retina
  • Spinal Cord

Neuroimaging

  • Brain mapping
  • Electroencephalogram
    • Volume conduction
  • Event-related potential
  • Functional magnetic resonance imaging
  • Intracellular recording
    • Sharp electrode
    • Path-clamp
  • Magnetoencephalogram
  • Microelectrode array
  • Multiunit activity
    • Local field potential
  • Near infrared imaging
  • Positron emission tomography
  • Source localization

Development

  • Activity-dependent plasticity
  • Axonal growth and guidance
  • Dendritic branching
  • Development of retinotectal map
  • Development of sensory systems
  • Neurogenesis
  • Synaptogenesis
  • Glia
  • Myelination

Dynamical Systems

  • History of nonlinear science

Phase space

  • Dynamical system
    • Vector-field
    • Trajectory
    • Equilibrium
    • Periodic orbit
    • Phase portrait
  • Stability
    • Invariant set
    • Attractor
    • Attraction domain
    • Separatrix
    • Bistability
    • Hysteresis
    • Linear analysis
  • Asymptotic methods
    • Averaging
    • Multiple scale analysis
    • Perturbation theory

Oscillators

  • Bursting
  • Central pattern generation
    • Half-center oscillators
  • Chaotic oscillator
    • Lorenz model
    • Rossler model
    • Hilbert transform
  • Chemical oscillator
    • Belousov-Zhabotinsky reaction
    • Brusselator
    • Oregonator
  • Circadian clock
  • Chua's circuit
  • Delay-differential equation
  • Feedback control
  • FitzHugh-Nagumo model
    • McKean model
  • Heart muscle
  • Hodgkin-Huxley model
  • Integrate-and-fire neuron
    • Exponential integrate-and-fire neuron
    • Leaky integrate-and-fire neuron
    • Quadratic integrate-and-fire neuron
    • Theta neuron
  • Josephson junction
  • Mitotic cycle
  • Morris-Lecar model
  • Quasi-periodic oscillator
  • Periodic orbit
    • Bendixson criteria
    • Floquet theory
    • Isochron
    • Phase oscillator
  • Predator-Prey model
    • Lotka-Volterra model
    • Population dynamics
  • Pendulum
    • Radial clock
    • Rotator
  • Relaxation oscillator
    • Nullcline
    • Duffing oscillator
    • Lienard oscillator
    • van der Pol oscillator
  • Weakly nonlinear oscillator
  • Wilson-Cowan model

Synchronization

  • Burst synchronization
  • Chain of oscillators
  • Fast threshold modulation
  • Gate control
  • Kuramoto phase model
  • Malkin theorem
  • Mean-field synchronization
  • Resonance
  • Phase response curve
  • Pulse coupled oscillators
  • Slowly coupled oscillators
  • Synchronization
    • Arnold tongues
    • Entrainment
    • Generalized synchronization
    • Locking
    • Phase diffusion
    • Rotation number
  • Weakly coupled oscillators

Pattern formation

  • Breathers
  • Cellular automata
  • Excitable media
    • Forest fire
  • Gradient system
    • Lyapunov function
  • Hallucination
  • Morphogenesis
  • Reaction diffusion system
    • Ginzburg-Landau equation
    • Kuramoto-Sivashinsky equation
    • Turing pattern
  • Self-organization
    • Order parameter
    • Synergetics
  • Stripe formation
  • Symmetry breaking
  • Symmetry group
  • Traveling wave
    • Evans function
    • Zeldovich-Frank-Kamenetsky equation

Noise and Chaos

  • 1/f noise
  • Attractor reconstruction
    • Correlation dimension
    • Embedding
    • Lyapunov dimension
    • Markov partition
    • Unstable periodic orbits
  • Billiards
  • Chaos
    • Butterfly effect
    • Nonwandering set
    • Recurrence
    • Strange attractor
    • Transitive set
  • Coherence resonance
  • Ergodic theory
    • Entropy of ergodic system
    • Invariant measure
  • Fractals
    • Cantor set
    • Mandelbrot set
    • Julia set
    • Sierpinski triangle
  • Intermittency
  • KAM theory
  • Lyapunov exponent
  • Numerical methods
  • Percolation theory
  • Random walk
    • Brownian motion
    • Deterministic walk in random environment
  • Resonance
  • Self-organized criticality
    • Avalanche
  • Statistical mechanics
    • Fokker-Planck equation
    • Ising model
    • Metropolis method
    • Monte-Carlo method
  • Stochastic dynamics
    • Markov process
    • Ornstein-Uhlenbeck process
    • Renormalization
    • Stochastic process
  • Stochastic resonance
  • Symbolic dynamics
    • Bernoulli shift
    • Smale horseshoe
    • Sharkovsky theorem
  • Turbulence
  • Universality

Bifurcation theory

  • Andronov-Hopf bifurcation
  • Andronov-Leontovich theorem
  • AUTO
  • Bautin bifurcation
  • Bifurcations
    • Bifurcation diagram
    • Co-dimension
    • Local vs. global bifurcation
    • Normal form
    • Phase transition
  • Blue-sky catastrophe
  • Bogdanov-Takens bifurcation
  • Bursting
  • Canard (French duck) solution
  • Catastrophe theory
  • Center-manifold reduction
  • Cusp bifurcation
  • Delayed loss of stability
  • Excitability
  • Hartman-Grobman theorem
  • Heteroclinic bifurcation
  • Homoclinic bifurcation
    • Melnikov method
  • Hopf-Hopf bifurcation
  • Flip bifurcation
  • Fold-Hopf bifurcation
  • Fold limit cycle bifurcation
  • MATCONT
  • Neimark-Sacker bifurcation
  • Period doubling
  • Pitchfork bifurcation
  • Saddle-node bifurcation
  • Shilnikov bifurcation
  • Singularity theory
  • Structural stability
  • Transcritical bifurcation
  • Threshold
  • XPPAUT

Maps

  • Circle map
    • Poincaré-Denjoy theory
    • Rotation number
  • Coupled map lattice
  • Hénon map
  • Logistic map
  • Map
    • Cobweb diagram
    • Difference equation
    • Poincare return map
  • Non-invertible map

Simulation environment

  • GENESIS
  • LABVIEW
  • MATCONT
  • MATEMATICA
  • MATLAB
  • NEURON
  • XPPAUT

Neural Networks

  • History of artificial neural networks

Spiking networks

  • Coincidence detection
  • Neuronal code
    • Interval code
    • Population code
    • Rate code
    • Temporal code
  • Polychrony
    • Transmission delay
  • Pulsed coupled neural networks
  • Spike timing dependent plasticity
  • Spiking neurons
  • Synchrony
  • Synfire chain

Recurrent networks

  • Associative memory* Attractor network
  • Boltzmann machine
  • Brain-state-in-a-box
  • Cauchy machine
  • Cellular neural network
  • Chaotic network
  • Dynamic link architecture
  • Excitatory-inhibitory network
  • GasNet network
  • Gaussian machine
  • Helmholtz machine
  • Hopfield network
  • Liquid state machine
  • Oscillatory associative memory
  • Scale-free network
  • Simulated annealing
  • Small-world network
  • Winner-take-all

Feedforward networks

  • Adaline
  • Bayesian learning
  • Counterpropagation
  • Delta learning rule
  • Error back-propagation
  • Kernel based learning
  • Kolmogorov theorem
  • Neocognitron
  • McCulloch-Pitts neuron
  • Minimum description length
  • Multilayer network
  • Pattern recognition
  • Perceptron
  • Radial basis function
  • Supervised learning
  • Support vector machine
  • Universal approximator
  • Vapnik-Chervonenkis dimension

Unsupervised learning

  • Adaptive resonance theory
  • Clustering
  • Hebbian learning rule
  • Self-organizing maps

Reinforcement learning

  • Conditioning
  • Actor-critic method
    • Adaptive critic
  • Dynamic programming
  • Eligibility trace
  • Q-learning
  • Temporal difference learning
    • Exploration vs. exploitation

Evolutionary computation

  • Artificial life
    • Artificial immune system
  • Neural Darwinism
  • Evolutionary robotics
  • Game of life
  • Genetic algorithms
  • Swarm intelligence
    • Particle swarm
    • Ant colony


Artificial intelligence

  • Adaptive filter
  • Alpha-beta pruning
  • Belief network
  • Cybernetics
  • Decision network
  • Expert system
  • Game theory
  • Graph theory
  • Graphical model
  • Formal grammar
  • Heuristics
  • Intelligent agent
  • Knowledge representation
  • Formal language
  • Logical reasoning
  • McCulloch-Pitts neuron
  • Multiagent system
  • NP-completeness
  • Optimization
  • Planing and acting
  • Probabilistic reasoning
  • Representation theory
  • Queuing
  • Robotics
  • Search method
  • Semantic network
  • Schema theory
  • Situation calculus
  • Syntax and parsing
  • Theorem prover
  • Traveling salesman problem
  • Turing test
  • Utility theory

Information Theory

  • Bayesian statistics
  • Bootstrap
  • Causality
  • Cryptology
  • Data compression
  • Entropy
    • Entropy of spike train
    • Differential entropy
  • Fourier analysis
    • Spectrogram
    • Wavelet analysis
  • Fuzzy logic
  • Gaussian process
  • Hidden Markov model
  • Independent component analysis
  • Inference
  • Information
    • Mutual information
    • Noisy channel
  • Kolmogorov entropy
  • Maximum likelihood
  • Monte Carlo method
  • Noise
  • Nyquist frequency
  • Oversampling
  • Poisson process
  • Principal component analysis
  • Probability
  • Reverse correlation
    • Wiener kernel
  • Sampling theory
  • Signal-to-noise ratio

Pattern recognition

  • Clustering
  • Data mining
  • Face recognition
  • Feature analysis
  • Handwriting recognition
  • Image processing
    • Image segmentation
  • Kalman filter
  • Machine vision
  • Object recognition
  • Preprocessing
  • Sensor fusion
  • Signal processing
  • Speech recognition
  • Time series analysis
  • Vector quantization
  • Visual binding

Navigation

  • Biologically inspired robotics
  • Brain-based device
  • Goal directed behavior
  • Hippocampal place cell
  • Navigation in Ants and Bees
  • Path integration
  • SLAM

Hardware

  • Animats
  • Brain-computer interface
  • Neurocomputer
  • Neural prosthesis
  • Neuromorphic engineering
  • Phenotype
  • Reconfigurable networks
  • Robotics
  • Silicon neuron
  • VLSI implementation of neural networks


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