Dr. Jiapu Zhang
In development
Publications (selected):
https://orcid.org/0000-0003-2293-1220 https://scholar.google.com.au/citations?user=g7fdhowAAAAJ&hl=en&oi=ao https://sites.google.com/view/prof-dr-jiapuzhang/
[1] Optimization-based Molecular Dynamics Studies of SARS-CoV-2 Molecular Structures: Research on COVID-19. Jiapu Zhang (著), Springer Cham, 2023, ISBN: 978-3-031-36772-4
[2] Derivative-free hybrid methods in global optimization and applications. Jiapu Zhang (著), LAP LAMBERT Academic Publishing, 2011, ISBN: 978-3-8454-3580-0 http://researchonline.federation.edu.au/vital/access/HandleResolver/1959.17/137122
[3] Molecular Structures and Structural Dynamics of Prion Proteins and Prions: Mechanism Underlying the Resistance to Prion Diseases. Jiapu Zhang (著), Springer Dordrecht, 2015, ISBN: 978-94-017-7317-1
[4] Molecular Dynamics Analyses of Prion Protein Structures (1st ed. 2018 Edition): The Resistance to Prion Diseases Down Under. Jiapu Zhang (著), Springer Singapore, 2018, ISBN: 978-981-10-8814-8
[5] Molecular dynamics and optimization studies of horse prion protein wild type and its S167D mutant, Zhang JP (2024) arXiv:2110.00365, MDPI journal Zoonotic Diseases 4(3):187-200 (2024) doi: 10.3390/zoonoticdis4030017. https://www.mdpi.com/2813-0227/4/3/17
[6] Molecular dynamics studies of dog prion protein wild-type and its D159N mutant. Zhang JP. J Biomol Struct Dyn 2021, Vol 39, Issue 12, Pages 4234-4242, doi:10.1080/07391102.2020.1776155, PMID 32496928
[7] Molecular Dynamics Studies of the Bufallo Prion Protein Structured Region at Higher Temperatures. Zhang JP. The Open Bioinformatics Journal (Associate Editorial Board Membership annual paper) 2020, Volume 13, Pages 129-136, doi: 10.2174/1875036202013010129. https://benthamopen.com/contents/pdf/TOBIOIJ/TOBIOIJ-13-129.pdf
[8] The polar clasps of a bank vole PrP(168–176) prion protofibril revisiting. Zhang J. J Mol Model. 2019 Apr 2;25(5):108. doi: 10.1007/s00894-019-3981-z. PMID: 30937536
[9] Using graph theory and optimization theory to do data mining the large scale buffalo prion protein structure database. Zhang J, Chatterjee S, Wang F. OR Transactions 2017 21(2):73-83
[10] A Review on the Salt Bridge ASP177-ARG163 (O-N) of Wild-Type Rabbit Prion Protein. Zhang J, Wang F. J Biomol Struct Dyn. 2016 34(5):1020-8. PMID: 26103085
[11] Molecular dynamics studies on the buffalo prion protein. Zhang J, Wang F, Chatterjee S. J Biomol Struct Dyn. 34(4):762-77. PMID: 26043781
[12] A survey and a molecular dynamics study on the (central) hydrophobic region of prion proteins. Zhang J, Wang F. Curr Pharm Biotechnol. 2014;15(11):1026-48. Review. PMID: 25373387
[13] Molecular dynamics studies on the NMR structures of rabbit prion protein wild type and mutants: surface electrostatic charge distributions. Zhang J, Wang F, Zhang Y. J Biomol Struct Dyn. 2015;33(6):1326-35. doi: 10.1080/07391102.2014.947325. Epub 2014 Aug 8. PMID: 25105226
[14] Molecular dynamics studies on the NMR and X-ray structures of rabbit prion proteins. Zhang J, Zhang Y. J Theor Biol. 2014 Feb 7;342:70-82. doi: 10.1016/j.jtbi.2013.10.005. Epub 2013 Oct 31. PMID: 24184221
[15] Molecular dynamics studies on 3D structures of the hydrophobic region PrP(109-136). Zhang J, Zhang Y. Acta Biochim Biophys Sin (Shanghai). 2013 Jun;45(6):509-19. doi: 10.1093/abbs/gmt031. Epub 2013 Apr 5. Review. PMID: 23563221
[16] The structural stability of wild-type horse prion protein. Zhang J. J Biomol Struct Dyn. 2011 Oct;29(2):369-77. PMID: 21875155
[17] A novel canonical dual computational approach for prion AGAAAAGA amyloid fibril molecular modeling. Zhang J, Gao DY, Yearwood J. J Theor Biol. 2011 Sep 7;284(1):149-57. doi: 10.1016/j.jtbi.2011.06.024. Epub 2011 Jun 28. PMID: 21723301
[18] Molecular dynamics studies on the structural stability of wild-type dog prion protein. Zhang J, Liu DD. J Biomol Struct Dyn. 2011 Jun;28(6):861-9. PMID: 21469747
[19] Optimal atomic-resolution structures of prion AGAAAAGA amyloid fibrils. Zhang J, Sun J, Wu C. J Theor Biol. 2011 Jun 21;279(1):17-28. doi: 10.1016/j.jtbi.2011.02.012. Epub 2011 Mar 21. PMID: 21420420
[20] Comparison studies of the structural stability of rabbit prion protein with human and mouse prion proteins. Zhang J. J Theor Biol. 2011 Jan 21;269(1):88-95. doi: 10.1016/j.jtbi.2010.10.020. Epub 2010 Oct 21. PMID: 20970434
[21] Optimal molecular structures of prion AGAAAAGA amyloid fibrils formatted by simulated annealing. Zhang J. J Mol Model. 2011 Jan;17(1):173-9. doi: 10.1007/s00894-010-0691-y. Epub 2010 Apr 22. PMID: 20411399
[22] Studies on the structural stability of rabbit prion probed by molecular dynamics simulations of its wild-type and mutants. Zhang J. J Theor Biol. 2010 May 7;264(1):119-22. doi: 10.1016/j.jtbi.2010.01.024. Epub 2010 Jan 28. PMID: 20109469
[23] Studies on the structural stability of rabbit prion probed by molecular dynamics simulations. Zhang J. J Biomol Struct Dyn. 2009 Oct;27(2):159-62. PMID: 19583441
[24] Bagirov AM, Rubinov AM, Zhang JP (2005) Local optimization method with global multidimensional search, Journal of Global Optimization 32 (2) 161-179, DOI: 10.1007/[]s10898-004-2700-0.
[25] Ghosh R, Rubinov AM, Zhang JP (2005) Optimization approach for clustering datasets with weights, Optimization Methods and Software 20 335-351, DOI: 10.1080/10556780512331318191
[26] Bagirov AM, Rubinov AM, Zhang JP (2004) Local Optimization Method with Global Multidimensional Search for Descent, Optimization Online 2004. http://www.optimization-online.org/DB_FILE/2004/01/808.pdf
[27] Abbass HA, Bagirov AM, Zhang JP (2003) The discrete gradient evolutionary strategy method for global optimization, IEEE The 2003 Congress on Evolutionary Computation, 2003 (CEC '03) Vol 1, pp. 435-442, DOI: 10.1109/CEC.2003.1299608
[28] Bagirov AM, Zhang JP (2003) Comparative analyses of the cutting angle and simulated annealing methods in global optimization, Optimization 52 (4-5) 363-378, DOI: 10.1080/02331930310001611565
[29] Sun J, Zhang JP (2001) Global convergence of conjugate gradient methods without line search, Annals of Operations Research 103 161-173 DOI: 10.1023/A:1012903105391
[30] Zhang JP, A global and superlinearly convergent algorithm for nonlinear nondifferential convex programming problems with a generalized Armijo line-search, Masters (rsearch) degree thesis, Institute of Operations Research (at Qufu Normal University China), 1996, arXiv1309.0931
[31] Zhang JP (2023) My Father's Diaries 1966-1971: A Cherish Literature and History Material - now published (ISBN 978-620-2-41346-6, ISBN-10 6202413468) by the Golden iris, Golden Light Academic Publishing, on 2023-02-08, ii+82 pages. It's English version's ISBN number is 978-620-0-64379-7 by the Globe EDIT Publishing on 2023-03-17, ii+112 pages. https://my.goldenlight-publishing.com/catalog/details//store/gb/book/978-620-2-41346-6/%E5%AE%B6%E7%88%B6%E6%97%A5%E8%AE%B01966-1971 https://my.globeedit.com/catalog/details//store/gb/book/978-620-0-64379-7/my-father-s-diaries-1966-1971
